Peptidomics files

The following files are uploaded as part of an upcoming Milk Peptidomics protocol in Methods
in Molecular Biology (Springer).

Skyline files

• Standard peptide settings file: Standard_peptide_settings.skys
• Standard peptidomics output file: Peptidomics_standard_output.skyr

Protein library files

• Human milk protein library: HumanMilkProteinDatabase.fasta
• Cow milk protein library: CowMilkProteinDatabase.fasta
• Pig milk protein library: PigMilkProteinDatabase.fasta

Peptidomics tools

• Skyline Output Enhancement
• PepEx
• Evan Parker's Peptidomics Enzyme Estimator software

Milk Bioactive Peptide Database

• Available at Milk Bioactive Peptide Database.